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Pre-existing singleton E138A mutations in the reverse transcriptase gene do not affect the efficacy of first-line antiretroviral therapy regimens using rilpivirine in human 
immunodeficiency virus-infected
patients

Kuznetsova A, Lebedev A, Gromov K, Kazennova E, Zazzi M, Incardona F, Sönnerborg A, Bobkova M. Clinical Case Reports 2022, accepted 2021-05-31, https://doi.org/10.1002/ccr3.5373

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High-throughput sequencing reveals a high prevalence of pretreatment HIV-1 drug resistance in Sweden

Andersson E, Ambikan A, Brännström J, Aralaguppe SG, Yilmaz A, Albert J, Neogi U, Sönnerborg A. AIDS. 2021 Feb 2;35(2):227-234. https://doi.org/10.1097/QAD.0000000000002740. PMID: 33394670.

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Genetic Profile of HIV-1 in the Vologda Region: Domination of CRF03_AB and Rapid Distribution of URFs. Ozhmegova EN, Antonova AA, Lebedev AV, Melnikova TN, Krylova TV, Kazachek AV, Shiryaeva NA, Kirillova IL, Kazennova EV, Bobkova MR (2020)

HIV infection and immunosuppressive disorders. 2020. Vol. 12, No. 2. pp. 79-88

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Transmitted drug resistance to NRTIs and risk of virological failure in naïve patients treated with integrase inhibitors. 

Borghetti, A., Ciccullo, A., Lombardi, F., Baldin, G., Belmonti, S., Prosperi, M., Incardona, F., Heger, E., Borghi, V., Sönnerborg, A., Zazzi, M., De Luca, A. and Di Giambenedetto, S. (2020), HIV Med. https://doi.org/10.1111/hiv.12956

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Comparable in vitro activity of second-generation HIV-1 integrase strand transfer inhibitors (INSTIs) on HIV-1 clinical isolates with INSTI resistance mutations

Saladini F, Giannini A, Boccuto A, Dragoni F, Appendino A, Albanesi E, Vicenti I, Zazzi M. 

Antimicrob Agents Chemother. 2019 Oct 14.  [Epub ahead of print]

https://doi.org/10.1128/AAC.01717-19

pmid: 31611362

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Whole genome metagenomic analysis of the gut microbiome in HIV-1 infected individuals on antiretroviral therapy

Bai X, Narayanan A, Nowak P, Ray S, Neogi U, Sönnerborg A. Front Microbiology 2021, accepted 2021-05-31, https://doi.org/10.3389/fmicb.2021.667718

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Genomic Variations in Drug Resistant Mycobacterium tuberculosis Strains Collected from Patients with Different Localization of Infection

Chernyaeva E, Rotkevich M, Krasheninnikova K, Lapidus A, Polev DE, Solovieva N, Zhuravlev V, Yablonsky P, O’Brien SJ.

Antibiotics. 2021; 10(1):27. https://doi.org/10.3390/antibiotics10010027.

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Prevalence of Antiretroviral Drug Resistance Mutations Among Pretreatment and Antiretroviral Therapy-Failure HIV Patients in Uzbekistan. Mamatkulov A, Kazakova E, Ibadullaeva N, Joldasova E, Bayjanov A, Musabaev E, Kan N, Mustafaeva D, Lebedev A, Bobkova M, Kazennova E, Zohrabyan L (2020), AIDS Res Hum Retroviruses. 2020 Oct 8. https://doi.org/10.1089/AID.2020.0096. Epub ahead of print. PMID: 32873061.

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HIV-1 Sub-Subtype A6: Settings for Normalised Identification and Molecular Epidemiology in the Southern Federal District, Russia

Schlösser M, Kartashev VV, Mikkola VH, Shemshura A, Saukhat S, Kolpakov D, Suladze A, Tverdokhlebova T,
Hutt K, Heger E, Knops E, Böhm M, Di Cristanziano V, Kaiser R, Sönnerborg A, Zazzi M, Bobkova M and
Sierra S

Viruses 2020, 12, 475; https://doi.org/10.3390/v12040475

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Molecular Surveillance of HIV-1 Infection in Krasnoyarsk Region, Russia: Epidemiology, Phylodynamics and Phylogeography

Neshumaev DLebedev AMalysheva MBoyko ASkudarnov SOzhmegova EAntonova AKazennova EBobkova M.

Curr HIV Res. 2019;17(2):114-125.

https://doi.org/10.2174/1570162X17666190618155816.

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Dissemination of Mycobacterium tuberculosis is associated to a SIGLEC1 null variant that limits antigen exchange via trafficking extracellular vesicles 

Gálvez SBC,  Drobniewski F, Kontsevaya I, Arias L, Monguió‐Tortajada M, Erkizia I, Urrea V, Ong RY,  Luquin M, Dupont M, Chojnacki J, Dalmau J, Cardona P, Neyrolles O,  Lugo‐Villarino G, Vérollet C, Julián E,  Furrer H, Günthard HF, Crocker PR,  Tapia G, Borràs FE, Fellay J, McLaren PJ, Telenti A, Cardona PJ, Clotet B, Vilaplana C, Martinez‐Picado J,  Izquierdo‐Useros N, Journal of Extracellular Vesicles. 14 January 2021 https://doi.org/10.1002/jev2.12046 

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Prevalence and spatiotemporal dynamics of HIV-1 circulating recombinant form 03_AB (CRF03_AB) in the former Soviet Union countries, Lebedev A, Pasechnik O, Ozhmegova E, Antonova A, Blokh A, Grezina L, Sandyreva T, Dementeva N, Kazennova E, Bobkova M. PLoS ONE, 2020, 15(10): e0241269. https://doi.org/10.1371/journal.pone.0241269

journal antimicrobial chem_jac_75_10cove

In vitro cross-resistance to doravirine in a panel of HIV-1 clones
harbouring multiple NNRTI resistance mutations. 

Saladini F, Giammarino F, Hosseini BA, Giannini A, Boccuto A,
Dragoni F, Vicenti I, Shafer RW and Zazzi M (2020), J Antimicrob Chemother, https://doi.org/10.1093/jac/dkaa401

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Analysis of HIV-1 (Human immunodeficiency virus-1, Lentivirus, Orthoretrovirinae, Retroviridae) Nef protein polymorphism of variants circulating in the former USSR countries.

Gromov, K. & Kazennova, Elena & Kireev, Dmitry & Murzakova, A. & Lopatukhin, A. & Bobkova, M.

Problems of Virology 2019; 64(6)
https://doi.org/10.36233/0507-4088-2019-64-6-281-290

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MiDRMpol: A High-Throughput Multiplexed Amplicon Sequencing Workflow to Quantify HIV-1 Drug Resistance Mutations against Protease, Reverse Transcriptase, and Integrase Inhibitors 

Shambhu G Aralaguppe, Anoop T Ambikan, Manickam Ashokkumar, Milner M Kumar, Luke Elizabeth Hanna, Wondwossen Amogne, Anders Sönnerborg, Ujjwal Neogi

Viruses 2019; 11: 806. 

https://doi.org/10.3390/v11090806